Welcome to nideconv

Nideconv is an easy-to use Python library that can perform automated deconvolution of (primarily) slowly fluctuating (proxies of) neural signals like pupil size and BOLD fMRI. It was developed at the Vrije Universiteit and the Spinoza Centre for Neuroimaging by Gilles de Hollander and Tomas Knapen.

Getting started

• Installing nideconv

Tutorials

• Deconvolution
• Basis functions
• Deconvolution on group of subjects
• Extract timeseries from ROIs using fmriprep data
• Bayesian hierachical deconvolution of neural signals

Reference

• ResponseFitter
• GroupResponseFitter
• NiftiResponseFytter
• simulate_fmri_experiment
• get_fmriprep_timeseries